QMIR 2026
Week 2: Reproducible Research with R, Quarto & Git
Tristan Muno
February 9, 2026
Notes on last week
- Send me GitHub Account name/email
- If you mail me please include QMIR in the Betreff
- I show you a complex workflow, but be pragmatic not dogmatic
- Tools should serve you, not the other way around
- 80/20 principle
- Dont let perfect be the enemy of good
Agenda
- Recap: The toolbox
- Positron
- Quarto
- Git and GitHub
Positron
Quarto
quarto render mydocument.qmd
quarto preview mydocument.qmd
Git
-> this command tells git to stage a change
git commit mydocument.qmd -m "Made some changes"
-> this command tells git to commit a change
-> this command tells git to push the newest changes to the remote repository on GitHub
Thank you for your attention and see you next week!
Please make sure to install all software and send me your GitHub name or email address.